Публикации

СПИСОК ПУБЛИКАЦИЙ СОТРУДНИКОВ ФИЦ БИОТЕХНОЛОГИИ ЗА 2016 ГОД

СПИСОК ПУБЛИКАЦИЙ СОТРУДНИКОВ ФИЦ БИОТЕХНОЛОГИИ ЗА 2015 ГОД

АРХИВ ПУБЛИКАЦИЙ СОТРУДНИКОВ ИНБИ РАН (1993-2014 гг)

 

Избранные публикации сотрудников ФИЦ Биотехнологии РАН в журналах, индексируемых БД Web of Science (WoS) и Scopus:

  • Daims H., Lebedeva E., Pjevae P., Han P., Herbold C., Albertsen M., Jehmlich N., Palatinszky M., Jierheilig J., Bulaev A., Kirkegaard R., van Bergen M., Rattei T., Berndinger B., Nielsen P., Wagner M.  (2015) Complete nitrification by Nitrospira bacteria. Nature. v. 528 (7583) p. 504-509. doi:10.1038/nature16461
  • Muntyan M.S., Cherepanov D.A., Malinen A.M., Bloch D.A., Sorokin D.Y., Severina I.I., Ivashina T.V., Lahti R., Muyzer G., Skulachev V.P. (2015) Cytochrome cbb3 of Thioalkalivibrio is a Na+-pumping cytochrome oxidase. Proceedings of the National Academy of Sciences of the USA (PNAS). 112 7695–7700
  • BattulinN, FishmanVS, Mazur AM, Pomaznoy М, Khabarova AA, AfonnikovDA, Prokhortchouk EB, Serov OL. (2015) Comparison of the three-dimensional organization of sperm and fibroblast genomes using the Hi-C approach. Genome biology. v. 16 77, doi:10.1186/s13059-015-0642-0
  • Oshkin I.Y., Beck D.A., Lamb A.E., Tchesnokova V., Benuska G., McTaggart T.L., Kalyuzhnaya M.G., Dedysh S.N., Lidstrom M.E., Chistoserdova L. (2015) Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response. ISME Journal. V. 9(5), p. 1119-1129
  • Nesbø C.L., Haverkamp T.H.A., Swithers K.S., Dahle H., Birkeland N.-K., Sokolova T., Kublanov I., Zhaxybayeva O. (2015) Evidence for extensive gene flow and thermotoga subpopulations in subsurface and marine environments. ISME Journal: Multidisciplinary journal of microbial ecology. Т. 9. № 7. p. 1532-1542
  • Tammis J., Sorokin D.Y., Jiang Y., van Loosdrecht M.C.M., Kleerbazem R. (2015) Lipid recovery from a vegetable oil emulsion using microbial enrichment culture. Biotechnology for Biofuels. 8 39 (DOI 10.1186/s13068-015-0228-9)
  • Martin Carlos, Volkov Pavel V., Rozhkova Aleksandra M., Puls Jürgen, Sinitsyn Arkady P. (2015) Comparative study of the enzymatic convertibility of glycerol- anddilute acid-pretreated sugarcane bagasse using Penicillium- andTrichoderma-based cellulase preparations. Industrial Crops and Products. v.77, p.382–390
  • Zvereva E.A., Kovalev L.I., Ivanov A.V., Kovaleva M.A., Zherdev A.V., Shishkin S.S., Lisitsyn A.B., Chernukha I.M., Dzantiev B.B. (2015) Enzyme immunoassay and proteomic characterization of troponin I as a marker of mammalian muscle compounds in raw meat and some meat products. Meat Science. v. 105, p. 46-52
  • Anisimkin V.I., Kuznetsova I.E., Kolesov V.V., Skladnev.D. A, Sorokin V.V. (2015) Detection of Small Amounts of Bacteria in Micro-Litre Liquid Samples Using Acoustic Modes in Piezoelectric Plates with Free Faces. Ultrasonics. V. 62. P. 156–159
  • Pankratov D., Sundberg R., Sotres J., Maximov I., Graczyk M., Suyatin D.B., Gonzalez-Arribas E., Lipkin A., Montelius L., Shleev S. (2015) Transparent and flexible, nanostructured and mediatorlessglucose/oxygen enzymatic fuel cells. Journal of Power Sources. v. 294, p. 501-506
  • Taranova N.A., Berlina A.N., Zherdev A.V., Dzantiev B.B. (2015) Traffic light” immunochromatographic test based on multicolor quantum dots for simultaneous detection of several antibiotics in milk. Biosensors & Bioelectronics. v. 63, p. 255-261
  • Andaine Seguin-Orlando, Cristina Gamba,Clio Der Sarkissian, Luca Ermini, Guillaume Louvel, Eugenia Boulygina, Alexey Sokolov, Artem Nedoluzhko, Eline D. Lorenzen, Patricio Lopez, H. Gregory McDonald, Eric Scott8, Alexei Tikhonov, Thomas W. Stafford, Jr1 , Ahmed H. Alfarhan, Saleh A. Alquraishi, Khaled A. S. Al-Rasheid, Beth Shapiro, Eske Willerslev1, Egor Prokhortchouk & Ludovic Orlando (2015) Pros and cons of methylationbased enrichment methods for ancient DNA. Scientific Reports. 5, 1186. Article number: 11826, doi 10.1038/srep11826
  • Serpionov GV, Alexandrov AI, Antonenko YN, Ter-Avanesyan MD (2015) A protein polymerization cascade mediates toxicity of non-pathological human huntingtin in yeast. Scientific Reports. v. 5 p. 18407. doi: 10.1038/srep18407
  • Bogomazova AN, Vassina EM, Goryachkovskaya TN, Popik VM, Sokolov AS, Kolchanov NA, Lagarkova MA, Kiselev SL, Peltek SE. (2015) No DNA damage response and negligible genome-wide transcriptional changes in human embryonic stem cells exposed to terahertz radiation. Scientific Reports. v. 5 7749
  • Zubareva A.A., Shcherbinina T.S., Varlamov V.P., Svirshchevskaya E.V. (2015) Intracellular sorting of differently charged chitosan derivatives and chitosan-based nanoparticles. Nanoscale. v.7, p.7942-7962 DOI: 10.1039/c5nr00327
  • Skryabin KG, Kuznetsov BB, Ravin NV, Kolganova TV, Beletsky AV, Mardanov AV, Visser RG. Potato Genome Sequencing Consortium. Nature. 2011. 475(7355):189 195
  • International Cancer Genome Consortium, Prokhortchouk E, Skryabin K, Yang H. International network of cancer genome projects. Nature. 2010. 464(7291):993-998
  •  Kim Y.J., Lee H.S., Kim E.S., Bae S.S., Lim J.K., Matsumi R., Lebedinsky A.V., Sokolova T.G., Kozhevnikova D.A., Cha S.-S., Kim S.-J., Kwon K.K., Imanaka T., Atomi H., Bonch-Osmolovskaya E.A., Lee J.-H., Kang S.G. Formate-driven growth coupled with H2 production. Nature, 2010, 467:352-355
  • Scelo G, Mazur A, Skryabin K, Prokhortchouk E, Lathrop GM. Variation in genomic landscape of clear cell renal cell carcinoma across Europe. Nat Commun. 2014. 5:5135
  • Purdue MP, Prokhortchouk E, Mazur AM, Chekanov NN, Skryabin KG, Brennan P. Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3. Nat. Genet. 2011. 43(1):60-65
  • Makarov, Vadim; Manina, Giulia; Mikusova, Katarina; Moellmann, Ute; Ryabova, Olga et al. Benzothiazinones Kill Mycobacterium tuberculosis by Blocking Arabinan Synthesis. Science. 2009, v. 324, p. 801-804
  • Michaelis W., Seifert R., Nauhaus K., Treude T., Thiel V., Blumenberg M., Knittel K., Gieseke A., Peterknecht K., Pape T., Boetius A., Amann R., Jørgensen B.B., Widdel F., Peckmann J., Pimenov N.V., Gulin M.B. Microbial reefs in the Black Sea fueled by anaerobic oxidation of methane. Science, 2002, Vol. 297, N 5583, pp. 1013-1015
  • Hatzenpichler R., Lebedeva E.V., Spieck E., Stoecker K., Richter A., Daims H., Wagner M. A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring. Proc. Natl. Acad. Sci. USA, 2008, V 105, N 6, pp. 2134–2139
  • Ferrario S., Immink R.G.H., Shchennikova A., Busscher-Lange J., Angenent G.C. The MADS box gene FBP2 is required for the SEPALLATA function in petunia. Plant Cell J. 2003. 15(4):914-925
  • Fokina A.V., Sokolov S.S., Kang H.A., Kalebina T.A., Ter-Avanesyan M.D., Agaphonov M.O. Inactivation of Pmc1 vacuolar Ca2+ ATPase causes G2 cell cycle delay in Hansenula polymorpha. Cell Cycle. 2012, 11: 778-784
  • Trofimov A.A., Polyakov K.M., Tikhonova T.V., Tikhonov A.V., Safonova, Boyko K.M., Dorovatovskii P.V., Popov V.O. Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity. Acta Crystallographica. Section D: Biological Crystallograph. 2012, v. 68, № 2, 144–153
  • Afanasieva EG, Kushnirov VV, Tuite MF, Ter-Avanesyan MD. Molecular basis for transmission barrier and interference between closely related prion proteins in yeast. Journal of Biological Chemistry. 2011; 286:15773-15780
  • Nevzorov I.A., Nikolaeva O.P., Kainov Y.A., Redwood C.S., Levitsky D.I. Conserved non-canonical residue Gly-126 confers instability to the middle part of the tropomyosin molecule. Journal of Biological Chemistry, 2011, v. 286, No. 18, p. 15766–15772
  • Ravin, V., Ravin, N., Casjens, S., Ford, M., Hatfull, G., & Hendrix, R. Genomic sequence and analysis of the atypical bacteriophage N15. J. Mol. Biol. 2000. 299, 53-73
  • Mardanov A.V., Ravin N.V., Kuznetsov B.B., Samigullin T.H., Antonov A.S., Kolganova T.V., Skryabin K.G. Complete sequence of the duckweed (Lemna minor) chloroplast genome: structural organisation and phylogenetic relationships to other angiosperms. J. Mol. Evol., 2008, 66(6), 555-564
  • Mukamolova, GV; Turapov, OA; Young, DI; Kaprelyants, AS; Kell, DB; Young, M. A family of autocrine growth factors in Mycobacterium tuberculosis. Molecular Microbiology. 2002, v. 46, p. 623-635
  • Nazina T.N., Tourova T.P., Poltaraus A.B., Novikova E.V., Grigoryan A.A., Ivanova A.E., Lysenko A.M., Petrunyaka V.V., Osipov G.A., Belyaev S.S., Ivanov M.V. Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G. stearothermophilus, G. th. Int. J. Syst. Evol. Microbiol. 2001, 51(Pt 2), pp. 433-446
  • Podosokorskaya O.A., Kadnikov V.A., Gavrilov S.N., Mardanov A.V., Karnachuk O.V., Ravin N.A., Bonch-Osmolovskaya E.A., Kublanov I.V. Characterization of Melioribacter roseus gen. nov., sp. nov., a novel facultatively anaerobic thermophilic cellulolytic bacterium from the class Ignavibacteria, and a proposal of a novel bacterial phylum Ignavibacteriae. Environmental Microbiology. 2013, 15:1759-71
  • Mardanov A.V., Ravin N.V., Svetlitchnyi V.A., Beletsky A.V., Miroshnichenko M.L., Bonch-Osmolovskaya E.A., Skryabin K.G. Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis. Appl. Environ. Microbiol. 2009, 75(13), pp. 4580-8. doi: 10.1128/AEM.00718-09.–151
  • Dotsenko G.S., Sinitsyna O.A., Hinz S., Wery J., Sinitsyn A.P. Bifunctional β-glycoside hydrolase GH family 3 from Chrysosporium lucknowense. Characterization of a GH family 3 beta-glycoside hydrolase from Chrysosporium lucknowense and its application to the hydrolysis of beta-glucan and xylan. Bioresource Technology. 2012, v. 112, 345-349
  • Dzantiev B.B., Byzova N.A., Urusov A.E., Zherdev A.V. Immunochromatographic methods in food analysis. Trends in Analytical Chemistry, 2014, v. 55, p. 81-93
  • Shleev, S; Tkac, J; Christenson, A; Ruzgas, T; Yaropolov, AI; Whittaker, JW; Gorton, L. Direct electron transfer between copper-containing proteins and electrodes. Biosensors & Bioelectronics. 2005, v. 20, p. 2517-2554
  • Shleev, S; Jarosz-Wilkolazka, A; Khalunina, A; Morozova, O; Yaropolov, A; Ruzgas, T; Gorton, L. Direct electron transfer reactions of laccases from different origins on carbon electrodes. Bioelectrochemistry. 2005, v. 67, p. 115-124
  • Rusanov A.L., Savitsky A.P. Fluorescence resonance energy transfer between fluorescent proteins as powerful toolkits for in vivo studies, Laser Physics Letters. 2011, v. 8, № 2, p. 91-102
  • Kuzminov F.I., Karapetyan N.V., Rakhimberdieva M.G., Elanskaya I.V., Gorbunov M.Y., Fadeev V.V. Investigation of OCP-triggered dissipation of excitation energy in PSI/PSII-less Synechocystis sp. PCC 6803 mutant using Non-Linear Fluorimetry. Biochim. Biophys. Acta (Bioenergetics). 2012, v. 1817, 1012-1021