Laboratory of Molecular Identification

Denis S. Grouzdev
Ph.D.
Head of Laboratory
INB, room 311
Телефон +7 (499) 135-12-40
E-Mail denisgrouzdev@gmail.com

Areas of research:

  • Taxonomy, evolution and genetic engineering of magnetotactic bacteria
  • Development of bacterial magnetosomes applications
  • Phylogenetics and taxonomy of prokaryotes
  • Anoxic filamentous phototrophic bacteria: genomics, diversity and evolution
  • Identification of microorganisms on the basis of a comparative analysis of genes encoding ribosomal RNA
  • Research of species diversity of microbial communities
  • Sequencing and analysis of prokaryotic genomes
  • Development of molecular markers for the identification of functional groups of prokaryotes
  • Biosafety of GMOs
  • Development and verification of methods for identification of GMOs in food and plant raw materials

 

Selected publications:

1. Savvichev A. S., Kokryatskaya N. M., Zabelina S. A., Rusanov I. I., Zakharova E. E., Veslopolova E. F., Lunina O. N., Patutina E. O., Bumazhkin B. K., Gruzdev D. S., Sigalevich P. A., Pimenov N. V., Kuznetsov B. B. and Gorlenko V. M. 2017. Microbial processes of the carbon and sulfur cycles in an ice-covered, iron-rich meromictic lake Svetloe (Arkhangelsk region, Russia). Environ Microbiol, 19: 659–672.
http://onlinelibrary.wiley.com/doi/10.1111/1462-2920.13591/full

2. Kozyaeva V.V., Grouzdev D.S., Dziuba M.V., Kuznetsov B.B. 2017. Diversity of magnetotactic bacteria of the Moskva River.   Microbiology, 86: 106-112.
https://link.springer.com/article/10.1134/S0026261717010088

3. Dziuba M., Koziaeva V., Grouzdev D., Burganskaya E., Baslerov R., Kolganova T., Chernyadyev A., Osipov G., Andrianova E., Gorlenko V., Kuznetsov B. 2016. Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., novel freshwater magnetotactic bacteria isolated from three distinct geographical points of European Russia. International Journal of Systematic and Evolutionary Microbiology, 66: 2069-2077.

4. Gaisin V.A., Grouzdev D.S., Namsaraev Z.B., Sukhacheva M.V., GorlenkoV.M., Kuznetsov B.B. 2016. Biogeography of thermophilic phototrophic bacteria belonging to Roseiflexus genus. FEMS Microbiology Ecology, 92 (3) fiw012.

5. Gaisin V.A., Kalashnikov A.M., Sukhacheva M.V., Namsaraev Z.B., Barhutova D.D., Gorlenko V.M., Kuznetsov, B.B. 2015. Filamentous anoxygenic phototrophic bacteria from cyanobacterial mats of Alla hot springs (Barguzin Valley, Russia). Extremophiles, 19(6): 1067-1076.

6. Zhilina T.N., Zavarzina D.G., Detkova E.N., Patutina E.O., Kuznetsov B.B. 2015. Fuchsiella ferrireducens sp. Nov, a novel haloalkaliphilic, lithoautotrophic homoacetogen capable of iron reduction, and emendation of the description of the genus Fuchsiella. International Journal of Systematic and Evolutionary Microbiology, 65(8): 2432-2440.

7. Grouzdev DS, Kuznetsov BB, Keppen OI, Krasil’nikova EN, Lebedeva NV, Ivanovsky RN. 2015. Reconstruction of Bacteriochlorophyll Biosynthesis Pathways in the Filamentous Anoxygenic Phototrophic Bacterium Oscillochloris trichoides DG-6 and Evolution of Anoxygenic Phototrophs of the Order Chloroflexales. Microbiology (UK), 161(1).

8. Grouzdev DS, Dziuba MV, Kurek DV, Ovchinnikov AI, Zhigalova NA, Kuznetsov BB, Skryabin KG. 2014. Optimized Method for Preparation of IgG-Binding Bacterial Magnetic Nanoparticles. PLoS One, 15;9(10):e109914.

9. Kevbrin V., Boltyanskaya Y., Zhilina T., Kolganova T., Lavrentjeva E., Kuznetsov B. 2013. Proteinivorax tanatarense gen. nov., sp. nov., an anaerobic, haloalkaliphilic, proteolytic bacterium isolated from a decaying algal bloom, and proposal of Proteinivoraceae fam. nov. Extremophiles, 17 (5): 747-756.

10. Saralov A.I., Baslerov R.V., Kuznetsov B.B. 2013. Haloferax chudinovii sp. nov., a halophilic archaeon from Permian potassium salt deposits. Extremophiles, 17 (3): 499-504.

11. Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, Ponce O, Martinez D, De la Cruz G; Chakrabarti SK, Patil VU; Skryabin KG, Kuznetsov BB, Ravin NV, Kolganova TV, Beletsky AV, Mardanov AV; Di Genova A; Bolser DM, Martin DM, Li G, Yang Y; Kuang H, Hu Q; Xiong X; Bishop GJ; Sagredo B, Mejía N; Zagorski W, Gromadka R, Gawor J, Szczesny P; Huang S, Zhang Z, Liang C, He J, Li Y, He Y, Xu J, Zhang Y, Xie B, Du Y, Qu D, Bonierbale M, Ghislain M, Del Rosario Herrera M; Giuliano G, Pietrella M, Perrotta G, Facella P; O’Brien K; Feingold SE, Barreiro LE, Massa GA; Diambra L; Whitty BR, Vaillancourt B, Lin H, Massa AN, Geoffroy M, Lundback S, Dellapenna D, Robin Buell C, Sharma SK, Marshall DF, Waugh R, Bryan GJ, Destefanis M, Nagy I, Milbourne D, Thomson SJ, Fiers M, Jacobs JM; Nielsen KL, Sønderkær M; Iovene M, Torres GA, Jiang J, Veilleux RE; Bachem CW, de Boer J, Borm T, Kloosterman B, van Eck H, Datema E, Te Lintel Hekkert B, Goverse A, van Ham RC, Visser RG. Genome sequence and analysis of the tuber crop potato. — Nature, 2011, Vol. 475, PP. 189–195, 14 July

12. Kuznetsov BB, Ivanovsky RN, Keppen OI, Sukhacheva MV, Bumazhkin BK, Patutina EO, Beletsky AV, Mardanov AV, Baslerov RV, Panteleeva AN, Kolganova TV, Ravin NV, Skryabin KG. Draft genome sequence of the anoxygenic filamentous phototrophic bacterium Oscillochloris trichoides ssp. DG-6. — Journal of Bacteriology, 2011, Vol. 193, No. 1, p. 321-322