| № | Collection | Scientific unit |
| 1. | Unique collection of yeast organisms covering the entire spectrum of yeast energy metabolism | Laboratory of Bioenergetics (Head of Laboratory: Prof. Nadezhda P. Yurina) |
| 2. | Collection of genetically-labeled strains of the yeast Saccharomyces Cerevisiae | Laboratory of Molecular Genetics (Head of Laboratory: Prof. Alexander I. Alexandrov) |
| 3. | Collection of different strains of the ascomycete Neurospora crassa | Laboratory of Ecological and Evolutionary Biochemistry (Head of Laboratory: Yulia I. Deryabina) |
| 4. | Collection of thermophilic and thermotolerant yeast species | Laboratory of Ecological and Evolutionary Biochemistry (Head of Laboratory: Yulia I. Deryabina) |
| 5. | Collection of microorganisms capable of synthesizing polyhydroxyalkanoates | Laboratory of Biochemistry of Nitrogen Fixation and Nitrogen Metabolism (Head of Laboratory: Prof. Aleksey F. Topunov) |
| 6. | Collection of nodule bacteria – symbionts of leguminous plants | Laboratory of Biochemistry of Nitrogen Fixation and Nitrogen Metabolism (Head of Laboratory: Prof, Aleksey F. Topunov) |
| 7. | Collection of hydrocarbon-oxidizing bacterial cultures (30 strains) | Laboratory of Petroleum Microbiology (Head of Laboratory: Tamara N. Nazina) |
| 8. | Collection of haloalkaliphilic bacteria | Laboratory of Relict Microbial Communities (Head of Laboratory; Prof. Nikolay V. Pimenov) |
| 9. | Collection of haloalkaliphilic cyanobacteria | Laboratory of Relict Microbial Communities (Head of Laboratory; Prof. Nikolay V. Pimenov) |
| 10. | Collection of ombrophilic bacteria | Laboratory of Relict Microbial Communities (Head of Laboratory; Prof. Nikolay V. Pimenov) |
| 11. | Collection of sulfate-reducing bacteria | Laboratory of Relict Microbial Communities (Head of Laboratory; Prof. Nikolay V. Pimenov) |
| 12. | Collection of thermophilic prokaryotes (isolates mainly representing new taxa) | Depratment of Extremophiles Biology (Head of the Department: Prof. Elizaveta A. Bonch-Osmolovskaya) |
| 13. | Collection of microorganism cultures (acidophilic sulfur- and iron-oxidizing microorganisms, nitrifying microorganisms) | Laboratory of chemolitotrophic microorganisms (Head of Laboratory: Alexander G. Bulaev) |
| 14. | Collection of microorganism cultures from cold ultrafresh habitats (methanotrophs, planctomycetes, acidobacteria) | Laboratory of Molecular Ecology and Phylogenomics of Bacteria (Head of Laboratory: Svetlana N. Dedysh) |
| 15. | Collection of filamentous fungi (representatives of the genera Aspergillus, Blakeslea, Cunninghamella, Mucor) | Group of Experimental mycology (Head of Laboratory: Vera M. Tereshina) |
| 16. | Collections of unique bacteria: – new phototrophic taxa (1 family, 19 genera, 41 species) + 5 types of chemotrophs); – new taxa of hemolytic autotrophs (sulfur-oxidizing and nitrifying bacteria and gasotrophic bacteria: methanotrophic, carboxydotrophic and hydrogenotrophic) – 80 new species, 35 new genera, 1 new family and 1 new order were described – 3 new genera and 31 new species of sulphur and iron bacteria |
Laboratory of Ecology and Geochemical Activity of Microorganisms (Head of Laboratory: Tatiana V. Khizniak) |
| 17. | Сollection comprises microorganisms isolated at the Laboratory and deposited in the Russian and foreign collections: DSM, ATCC, VKM, NBRC.
Acetobacterium bakii sp. npv.- DSM 8329 |
Laboratory of Microbiology of Anthropogenic Habitats (Head of Laboratory: Prof. Yuriy V. Litti) |
| 18. | Collection of microorganism cultures UNIQEM | Laboratory of Viability of Microorganisms (Head of Laboratory: Yury A. Nikolaev) |
| 19. | Collection fund of actinobacteria | Laboratory of Viability of Microorganisms (Head of Laboratory: Yury A. Nikolaev) |
| 20. | Collection of transgenic beet seeds | Group of Plant Bioengineering (Head of the Group: Anastasia M. Kamionskaya) |
| 21. | Collection of transgenic sunflower seeds | Group of Plant Bioengineering (Head of the Group: Anastasia M. Kamionskaya) |
| 22. | Collection of isolates of viruses, bacteria associated with plants of grapes growing in the Republic of Crimea | Group of Plant Bioengineering (Head of the Group: Anastasia M. Kamionskaya) |